SRX178463
GSM987808: pro-B, p300 ChIP seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ep300

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
progenitor B
cell type
Rag1 deficient pro-B
chip antibody
p300 (sc-585x, Santa Cruz), lot# H2610
chip antibody manufacturer
Santa Cruz
genetic background
C57bl/6
genotype
Rag1-/-

Sequenced DNA Library

library_name
GSM987808: pro-B, p300 ChIP seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39113845
Reads aligned (%)
77.2
Duplicates removed (%)
13.7
Number of peaks
2095 (qval < 1E-05)

mm9

Number of total reads
39113845
Reads aligned (%)
77.0
Duplicates removed (%)
13.6
Number of peaks
1430 (qval < 1E-05)

Base call quality data from DBCLS SRA